Variant report

Variant	rs35211991
Chromosome Location	chr5:179642945-179642946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179642630..179645532-chr5:180286845..180289453,2	MCF-7	breast:
2	chr5:179635182..179638136-chr5:179641642..179644224,2	K562	blood:
3	chr5:179636157..179639359-chr5:179641461..179644523,3	MCF-7	breast:
4	chr5:179640079..179643387-chr5:179646560..179650820,4	K562	blood:

Variant related genes	Relation type
ENSG00000146090	Chromatin interaction
ENSG00000196670	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17627815	0.86[ASN][1000 genomes]
rs17627880	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34763496	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35067749	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35551113	0.83[EUR][1000 genomes]
rs36062422	0.82[EUR][1000 genomes]
rs4270655	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4309929	0.86[EUR][1000 genomes]
rs4441844	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4454029	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4469167	0.82[EUR][1000 genomes]
rs4700728	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4700924	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55944951	0.83[AFR][1000 genomes]
rs62406979	1.00[ASN][1000 genomes]
rs62406981	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406984	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406986	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6869231	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882940	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030437	chr5:179235423-179649944	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
2	nsv537982	chr5:179235423-179649944	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
3	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
4	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
5	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	esv3339444	chr5:179638546-179643144	Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179640400-179645200	Weak transcription	Brain Angular Gyrus	brain
2	chr5:179641200-179643000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:179642200-179643400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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