Variant report

Variant	rs35215716
Chromosome Location	chr15:56323249-56323250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:56323137-56323331	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RN7SL568P	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1112535	0.88[EUR][1000 genomes]
rs12909996	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12911653	0.88[EUR][1000 genomes]
rs12911833	0.88[EUR][1000 genomes]
rs12913147	0.88[EUR][1000 genomes]
rs12915953	0.88[EUR][1000 genomes]
rs16976674	0.95[EUR][1000 genomes]
rs2899595	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34236916	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34330530	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34841076	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35301686	0.88[EUR][1000 genomes]
rs35662811	0.95[EUR][1000 genomes]
rs35710039	0.84[EUR][1000 genomes]
rs35836088	0.88[EUR][1000 genomes]
rs35911067	0.88[EUR][1000 genomes]
rs35926005	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57683252	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71476757	1.00[AFR][1000 genomes]
rs71476762	0.88[EUR][1000 genomes]
rs71476763	0.88[EUR][1000 genomes]
rs71476768	0.95[EUR][1000 genomes]
rs7179929	0.88[EUR][1000 genomes]
rs8043287	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457161	chr15:56274443-56324451	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
4	nsv569545	chr15:56274443-56324451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
5	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56309600-56327200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:56320200-56326600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:56323000-56324000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links