Variant report

Variant	rs35216705
Chromosome Location	chr11:77287312-77287313
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RSF1-1	chr11:77286856-77287689	XLOC_009511

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs56709311	1.00[AMR][1000 genomes]
rs57008614	1.00[AMR][1000 genomes]
rs57229097	1.00[AMR][1000 genomes]
rs57544945	1.00[AMR][1000 genomes]
rs58758035	1.00[AMR][1000 genomes]
rs59231807	1.00[AMR][1000 genomes]
rs59293034	1.00[AMR][1000 genomes]
rs60695213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61186004	1.00[AMR][1000 genomes]
rs73492001	1.00[AMR][1000 genomes]
rs73493813	1.00[AMR][1000 genomes]
rs73493836	1.00[AMR][1000 genomes]
rs73498844	1.00[AMR][1000 genomes]
rs73498845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498854	1.00[AMR][1000 genomes]
rs73498869	1.00[AMR][1000 genomes]
rs73498882	1.00[AMR][1000 genomes]
rs73498884	1.00[AMR][1000 genomes]
rs73500705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500729	1.00[AMR][1000 genomes]
rs73500735	1.00[AMR][1000 genomes]
rs73500750	1.00[AMR][1000 genomes]
rs73500752	1.00[AMR][1000 genomes]
rs73500756	1.00[AMR][1000 genomes]
rs73500773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504713	1.00[AMR][1000 genomes]
rs73504718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504734	1.00[AMR][1000 genomes]
rs73504744	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504765	1.00[AMR][1000 genomes]
rs73504777	1.00[AMR][1000 genomes]
rs73504800	1.00[AMR][1000 genomes]
rs73506711	1.00[AMR][1000 genomes]
rs73506717	1.00[AMR][1000 genomes]
rs73506724	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506730	1.00[AMR][1000 genomes]
rs73506734	1.00[AMR][1000 genomes]
rs73506737	1.00[AMR][1000 genomes]
rs73506741	1.00[AMR][1000 genomes]
rs73506742	1.00[AMR][1000 genomes]
rs73506754	1.00[AMR][1000 genomes]
rs73506778	1.00[AMR][1000 genomes]
rs73508705	1.00[AMR][1000 genomes]
rs73508715	1.00[AMR][1000 genomes]
rs73508720	1.00[AMR][1000 genomes]
rs73508749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2752651	chr11:77211136-77318279	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1038974	chr11:77284036-77431228	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1041384	chr11:77284558-77419809	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77280800-77299600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:77284200-77287400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:77285800-77294400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:77287000-77287800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:77287200-77287800	Enhancers	Ovary	ovary

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