Variant report

Variant	rs60695213
Chromosome Location	chr11:77271023-77271024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77269827..77271432-chr11:77279511..77281156,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs35216705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56709311	1.00[AMR][1000 genomes]
rs57008614	1.00[AMR][1000 genomes]
rs57229097	1.00[AMR][1000 genomes]
rs57544945	1.00[AMR][1000 genomes]
rs58758035	1.00[AMR][1000 genomes]
rs59231807	1.00[AMR][1000 genomes]
rs59293034	1.00[AMR][1000 genomes]
rs61186004	1.00[AMR][1000 genomes]
rs73492001	1.00[AMR][1000 genomes]
rs73493813	1.00[AMR][1000 genomes]
rs73493836	1.00[AMR][1000 genomes]
rs73498844	1.00[AMR][1000 genomes]
rs73498845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498854	1.00[AMR][1000 genomes]
rs73498869	1.00[AMR][1000 genomes]
rs73498882	1.00[AMR][1000 genomes]
rs73498884	1.00[AMR][1000 genomes]
rs73500705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500729	1.00[AMR][1000 genomes]
rs73500735	1.00[AMR][1000 genomes]
rs73500750	1.00[AMR][1000 genomes]
rs73500752	1.00[AMR][1000 genomes]
rs73500756	1.00[AMR][1000 genomes]
rs73500773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504713	1.00[AMR][1000 genomes]
rs73504718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504734	1.00[AMR][1000 genomes]
rs73504744	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504765	1.00[AMR][1000 genomes]
rs73504777	1.00[AMR][1000 genomes]
rs73504800	1.00[AMR][1000 genomes]
rs73506711	1.00[AMR][1000 genomes]
rs73506717	1.00[AMR][1000 genomes]
rs73506724	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506730	1.00[AMR][1000 genomes]
rs73506734	1.00[AMR][1000 genomes]
rs73506737	1.00[AMR][1000 genomes]
rs73506741	1.00[AMR][1000 genomes]
rs73506742	1.00[AMR][1000 genomes]
rs73506754	1.00[AMR][1000 genomes]
rs73506778	1.00[AMR][1000 genomes]
rs73508705	1.00[AMR][1000 genomes]
rs73508715	1.00[AMR][1000 genomes]
rs73508720	1.00[AMR][1000 genomes]
rs73508749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2752651	chr11:77211136-77318279	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77267000-77272600	Enhancers	Placenta	Placenta
2	chr11:77268600-77273200	Enhancers	Fetal Intestine Small	intestine
3	chr11:77268800-77273400	Enhancers	Fetal Intestine Large	intestine
4	chr11:77269400-77271800	Enhancers	A549	lung
5	chr11:77269400-77272600	Enhancers	Hela-S3	cervix
6	chr11:77269600-77272400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:77269800-77271200	Weak transcription	K562	blood
8	chr11:77269800-77271800	Weak transcription	HSMM	muscle
9	chr11:77270000-77271800	Weak transcription	HepG2	liver
10	chr11:77270400-77271200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:77270400-77272200	Enhancers	HSMMtube	muscle
12	chr11:77270400-77272400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:77270400-77272400	Enhancers	NHLF	lung
14	chr11:77270400-77272600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:77270400-77272600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:77270400-77272600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:77270600-77271200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:77270600-77271400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:77270600-77271800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:77270600-77272000	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:77270600-77272400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:77270600-77272400	Enhancers	Osteobl	bone
23	chr11:77270600-77272600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:77270600-77272600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:77270600-77272600	Enhancers	HMEC	breast
26	chr11:77270600-77272600	Enhancers	NHDF-Ad	bronchial
27	chr11:77270600-77272600	Enhancers	NHEK	skin
28	chr11:77270800-77271800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:77270800-77272400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:77270800-77272600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:77271000-77272000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:77271000-77272000	Enhancers	NH-A	brain
33	chr11:77271000-77272200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:77271000-77272200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:77271000-77272200	Enhancers	HUVEC	blood vessel

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