Variant report

Variant	rs35219766
Chromosome Location	chr13:51796843-51796844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERPINE3-4	chr13:51795151-51798286	ncRnaDb_ncrna_FR376720_3

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1887161	0.89[ASN][1000 genomes]
rs2408300	0.83[ASN][1000 genomes]
rs7333270	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7333287	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9526734	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9526737	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568553	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3332869	chr13:51795701-51797799	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51795600-51797200	Active TSS	A549	lung
2	chr13:51795800-51797000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:51795800-51797000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:51795800-51797000	Bivalent/Poised TSS	GM12878-XiMat	blood
5	chr13:51795800-51797200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:51795800-51797400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:51795800-51797400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
8	chr13:51795800-51797400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr13:51795800-51797400	Bivalent/Poised TSS	Thymus	Thymus
10	chr13:51795800-51797600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr13:51795800-51797600	Active TSS	Brain Anterior Caudate	brain
12	chr13:51795800-51797600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
13	chr13:51795800-51797800	Active TSS	H1 Cell Line	embryonic stem cell
14	chr13:51795800-51797800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
15	chr13:51795800-51798000	Active TSS	Fetal Brain Female	brain
16	chr13:51795800-51798400	Active TSS	H9 Cell Line	embryonic stem cell
17	chr13:51795800-51798600	Active TSS	Brain Cingulate Gyrus	brain
18	chr13:51795800-51798800	Active TSS	Brain Hippocampus Middle	brain
19	chr13:51795800-51799000	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr13:51796000-51797000	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:51796000-51797000	Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr13:51796000-51797000	Active TSS	Fetal Lung	lung
23	chr13:51796000-51797000	Active TSS	Lung	lung
24	chr13:51796000-51797200	Active TSS	Gastric	stomach
25	chr13:51796000-51797200	Bivalent/Poised TSS	HSMM	muscle
26	chr13:51796000-51797200	Bivalent/Poised TSS	NH-A	brain
27	chr13:51796000-51797400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:51796000-51797400	Active TSS	Aorta	Aorta
29	chr13:51796000-51797400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr13:51796000-51797400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
31	chr13:51796000-51797400	Active TSS	Fetal Kidney	kidney
32	chr13:51796000-51797800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr13:51796000-51797800	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr13:51796000-51797800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr13:51796000-51797800	Active TSS	Left Ventricle	heart
36	chr13:51796000-51797800	Active TSS	Psoas Muscle	Psoas
37	chr13:51796000-51798000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:51796000-51798000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
39	chr13:51796000-51798000	Active TSS	Colon Smooth Muscle	Colon
40	chr13:51796000-51798000	Active TSS	Rectal Smooth Muscle	rectum
41	chr13:51796000-51798600	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr13:51796000-51798800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr13:51796000-51798800	Active TSS	Brain Angular Gyrus	brain
44	chr13:51796200-51797000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr13:51796200-51797000	Bivalent/Poised TSS	Primary T helper cells PMA-I stimulated	--
46	chr13:51796200-51797000	Bivalent/Poised TSS	Fetal Stomach	stomach
47	chr13:51796200-51797000	Bivalent/Poised TSS	Small Intestine	intestine
48	chr13:51796200-51797000	Active TSS	Hela-S3	cervix
49	chr13:51796200-51797000	Bivalent/Poised TSS	HSMMtube	muscle
50	chr13:51796200-51797200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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