Variant report

Variant	rs7333287
Chromosome Location	chr13:51798366-51798367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51793406..51795432-chr13:51797315..51800295,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1887161	0.93[ASN][1000 genomes]
rs2408300	0.85[ASN][1000 genomes]
rs35219766	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7333270	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526734	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9526737	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568553	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51795800-51798400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr13:51795800-51798600	Active TSS	Brain Cingulate Gyrus	brain
3	chr13:51795800-51798800	Active TSS	Brain Hippocampus Middle	brain
4	chr13:51795800-51799000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr13:51796000-51798600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr13:51796000-51798800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr13:51796000-51798800	Active TSS	Brain Angular Gyrus	brain
8	chr13:51796200-51798600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:51796200-51798600	Active TSS	Brain Substantia Nigra	brain
10	chr13:51797200-51798400	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr13:51797200-51803200	Weak transcription	Spleen	Spleen
12	chr13:51797400-51798400	Enhancers	Lung	lung
13	chr13:51797400-51803800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr13:51797400-51804600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr13:51797400-51804800	Weak transcription	Aorta	Aorta
16	chr13:51797600-51798400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:51797600-51799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:51797600-51804400	Weak transcription	NHLF	lung
19	chr13:51797800-51798400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
20	chr13:51797800-51798400	Active TSS	Brain Germinal Matrix	brain
21	chr13:51797800-51798400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr13:51797800-51798800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:51797800-51798800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr13:51797800-51799000	Weak transcription	Psoas Muscle	Psoas
25	chr13:51797800-51799200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr13:51797800-51803400	Weak transcription	Fetal Lung	lung
27	chr13:51797800-51803400	Weak transcription	HUVEC	blood vessel
28	chr13:51797800-51804000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr13:51797800-51806000	Enhancers	Fetal Brain Male	brain
30	chr13:51798000-51798400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr13:51798000-51798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr13:51798000-51798600	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr13:51798000-51798600	Active TSS	Brain Anterior Caudate	brain
34	chr13:51798000-51798600	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:51798000-51798800	Enhancers	Fetal Heart	heart
36	chr13:51798000-51799000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr13:51798000-51799200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr13:51798000-51799200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr13:51798000-51799200	Enhancers	Right Ventricle	heart
40	chr13:51798000-51803200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:51798000-51804000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr13:51798200-51798400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr13:51798200-51798400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr13:51798200-51798400	Active TSS	Fetal Brain Female	brain
45	chr13:51798200-51798400	Enhancers	Left Ventricle	heart
46	chr13:51798200-51798600	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr13:51798200-51799600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr13:51798200-51799800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr13:51798200-51799800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr13:51798200-51804600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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