Variant report

Variant	rs35227734
Chromosome Location	chr4:94750885-94750886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10002088	1.00[EUR][1000 genomes]
rs10020157	1.00[EUR][1000 genomes]
rs28451528	1.00[EUR][1000 genomes]
rs28531857	1.00[EUR][1000 genomes]
rs28563167	1.00[EUR][1000 genomes]
rs28712740	1.00[EUR][1000 genomes]
rs28716275	1.00[EUR][1000 genomes]
rs35647043	1.00[EUR][1000 genomes]
rs56152556	1.00[EUR][1000 genomes]
rs56758475	1.00[EUR][1000 genomes]
rs59611442	1.00[EUR][1000 genomes]
rs60567997	1.00[EUR][1000 genomes]
rs6829961	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1792557	chr4:94738158-95027272	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94748400-94751000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr4:94748400-94751000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr4:94748400-94751000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr4:94748400-94751000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
5	chr4:94748400-94751200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr4:94748400-94751600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
7	chr4:94748400-94751800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr4:94748600-94751000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:94749000-94751800	Bivalent Enhancer	Fetal Lung	lung
10	chr4:94749200-94751000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:94749200-94751000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:94749200-94751000	Bivalent Enhancer	Liver	Liver
13	chr4:94749200-94751200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
14	chr4:94749200-94751400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
15	chr4:94749200-94751400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
16	chr4:94749200-94751600	Bivalent Enhancer	Fetal Brain Male	brain
17	chr4:94749400-94751000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:94749400-94751000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:94749400-94751000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:94749400-94751200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr4:94749400-94751200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr4:94749400-94751200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr4:94749400-94751200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
24	chr4:94749400-94751200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
25	chr4:94749400-94751200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
26	chr4:94749400-94751400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
27	chr4:94749400-94751400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
28	chr4:94749400-94751400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
29	chr4:94749400-94751600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr4:94749600-94751200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
31	chr4:94749600-94751200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
32	chr4:94749800-94751000	Bivalent Enhancer	Lung	lung
33	chr4:94749800-94751000	Flanking Active TSS	Ovary	ovary
34	chr4:94749800-94751200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:94749800-94751400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:94749800-94751400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
37	chr4:94750000-94751000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:94750000-94751000	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
39	chr4:94750000-94751000	Bivalent Enhancer	Spleen	Spleen
40	chr4:94750000-94751200	Bivalent Enhancer	Placenta	Placenta
41	chr4:94750000-94751400	Bivalent Enhancer	HUVEC	blood vessel
42	chr4:94750000-94751800	Bivalent Enhancer	Fetal Heart	heart
43	chr4:94750200-94751000	Bivalent Enhancer	HMEC	breast
44	chr4:94750200-94751200	Bivalent Enhancer	Fetal Thymus	thymus
45	chr4:94750200-94751200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
46	chr4:94750200-94751200	Bivalent Enhancer	NHEK	skin
47	chr4:94750200-94751600	Bivalent Enhancer	Stomach Mucosa	stomach
48	chr4:94750200-94751800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr4:94750400-94751000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:94750400-94751000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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