Variant report
| Variant | rs56758475 |
|---|---|
| Chromosome Location | chr4:94820672-94820673 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:94809463..94811409-chr4:94820137..94822795,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10002088 | 1.00[EUR][1000 genomes] |
| rs10020157 | 1.00[EUR][1000 genomes] |
| rs28451528 | 1.00[EUR][1000 genomes] |
| rs28531857 | 1.00[EUR][1000 genomes] |
| rs28563167 | 1.00[EUR][1000 genomes] |
| rs28712740 | 1.00[EUR][1000 genomes] |
| rs28716275 | 1.00[EUR][1000 genomes] |
| rs35227734 | 1.00[EUR][1000 genomes] |
| rs35647043 | 1.00[EUR][1000 genomes] |
| rs56152556 | 1.00[EUR][1000 genomes] |
| rs59611442 | 1.00[EUR][1000 genomes] |
| rs60567997 | 1.00[EUR][1000 genomes] |
| rs6829961 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9994550 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008055 | chr4:94169131-95030074 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv931979 | chr4:94289958-95121723 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv821636 | chr4:94439636-95116590 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | esv1792557 | chr4:94738158-95027272 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:94820600-94821000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
