Variant report

Variant	rs35232368
Chromosome Location	chr11:74998422-74998423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74998139..75001020-chr11:75001108..75003377,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1109407	1.00[EUR][1000 genomes]
rs11236363	1.00[EUR][1000 genomes]
rs11236364	1.00[EUR][1000 genomes]
rs12274382	1.00[EUR][1000 genomes]
rs12287059	1.00[EUR][1000 genomes]
rs34348607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35315061	1.00[EUR][1000 genomes]
rs35891965	1.00[EUR][1000 genomes]
rs35969092	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57096650	1.00[EUR][1000 genomes]
rs60146945	1.00[AMR][1000 genomes]
rs61334831	1.00[EUR][1000 genomes]
rs61392501	1.00[EUR][1000 genomes]
rs73488706	1.00[EUR][1000 genomes]
rs73488721	1.00[EUR][1000 genomes]
rs73488794	1.00[AMR][1000 genomes]
rs73488800	1.00[AMR][1000 genomes]
rs73490707	1.00[AMR][1000 genomes]
rs73490761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
5	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74972400-75004400	Weak transcription	Fetal Brain Male	brain
2	chr11:74975600-74999000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:74987200-74998800	Strong transcription	Fetal Brain Female	brain
4	chr11:74987200-74999400	Weak transcription	Fetal Kidney	kidney
5	chr11:74987800-74998800	Strong transcription	Colonic Mucosa	Colon
6	chr11:74988200-75002000	Weak transcription	Thymus	Thymus
7	chr11:74988200-75008600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:74988200-75012400	Weak transcription	Small Intestine	intestine
9	chr11:74988400-75005400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:74988600-75001000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:74988800-75004200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:74989000-75000200	Weak transcription	K562	blood
13	chr11:74990000-75003800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:74991000-75001200	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:74991400-74998800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:74991400-75004000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:74991600-74998600	Weak transcription	Fetal Thymus	thymus
18	chr11:74991600-75004200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:74991600-75007800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:74991800-74998600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:74991800-74998600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr11:74991800-74998800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:74991800-74998800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:74991800-74999600	Weak transcription	HSMM	muscle
25	chr11:74991800-75000000	Weak transcription	NHDF-Ad	bronchial
26	chr11:74991800-75000400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:74991800-75001400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:74991800-75001400	Strong transcription	Placenta	Placenta
29	chr11:74991800-75004200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:74992000-74998600	Strong transcription	Rectal Smooth Muscle	rectum
31	chr11:74992000-74999200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:74992000-74999400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:74992000-74999800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:74992000-75003600	Strong transcription	Fetal Stomach	stomach
35	chr11:74992000-75004000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:74992200-74998800	Strong transcription	Adipose Nuclei	Adipose
37	chr11:74992200-74998800	Strong transcription	Liver	Liver
38	chr11:74992200-74998800	Strong transcription	Brain Anterior Caudate	brain
39	chr11:74992200-74998800	Strong transcription	Colon Smooth Muscle	Colon
40	chr11:74992400-74998600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:74992400-75000000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr11:74992400-75001400	Strong transcription	Fetal Muscle Leg	muscle
43	chr11:74992400-75003800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:74992400-75008600	Strong transcription	Primary T cells from cord blood	blood
45	chr11:74992600-75001600	Strong transcription	Fetal Intestine Large	intestine
46	chr11:74992600-75002000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:74992800-74999000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr11:74992800-75002000	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:74992800-75008000	Strong transcription	Fetal Intestine Small	intestine
50	chr11:74993400-75013200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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