Variant report

Variant	rs35891965
Chromosome Location	chr11:74983082-74983083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74982430..74984940-chr11:74988392..74991041,2	K562	blood:
2	chr11:74981094..74983729-chr11:74985370..74988312,2	K562	blood:
3	chr11:74982430..74985354-chr11:74988392..74990320,2	K562	blood:
4	chr11:74970975..74974100-chr11:74980576..74984657,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254429	Chromatin interaction
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1109407	1.00[EUR][1000 genomes]
rs11236363	1.00[EUR][1000 genomes]
rs11236364	1.00[EUR][1000 genomes]
rs12274382	1.00[EUR][1000 genomes]
rs12287059	1.00[EUR][1000 genomes]
rs34348607	1.00[EUR][1000 genomes]
rs35232368	1.00[EUR][1000 genomes]
rs35315061	1.00[EUR][1000 genomes]
rs35969092	1.00[EUR][1000 genomes]
rs57096650	1.00[EUR][1000 genomes]
rs61334831	1.00[EUR][1000 genomes]
rs61392501	1.00[EUR][1000 genomes]
rs73488706	1.00[EUR][1000 genomes]
rs73488721	1.00[EUR][1000 genomes]
rs73490761	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
5	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74970800-74988200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74972200-74984600	Weak transcription	Thymus	Thymus
3	chr11:74972400-75004400	Weak transcription	Fetal Brain Male	brain
4	chr11:74972600-74984600	Weak transcription	Fetal Thymus	thymus
5	chr11:74972800-74987200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:74972800-74991400	Weak transcription	Right Atrium	heart
7	chr11:74974000-74985000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:74975000-74983600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:74975000-74986800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:74975000-74987600	Weak transcription	Small Intestine	intestine
11	chr11:74975200-74986600	Strong transcription	Fetal Intestine Small	intestine
12	chr11:74975200-74988200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:74975200-74988400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:74975200-74991200	Strong transcription	Fetal Stomach	stomach
15	chr11:74975600-74984200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:74975600-74985400	Strong transcription	Fetal Intestine Large	intestine
17	chr11:74975600-74987400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:74975600-74988800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:74975600-74991400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:74975600-74999000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:74975800-74983400	Weak transcription	HUVEC	blood vessel
22	chr11:74975800-74991200	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:74976200-74983400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:74976200-74985800	Strong transcription	Spleen	Spleen
25	chr11:74976200-74991800	Strong transcription	Lung	lung
26	chr11:74976400-74984600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:74976400-74990200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr11:74976600-74994200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:74976800-74985400	Strong transcription	Liver	Liver
30	chr11:74976800-74986800	Strong transcription	Colon Smooth Muscle	Colon
31	chr11:74976800-74987200	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:74977000-74985400	Strong transcription	Brain Anterior Caudate	brain
33	chr11:74977200-74983600	Strong transcription	Primary hematopoietic stem cells	blood
34	chr11:74977200-74985200	Weak transcription	Primary B cells from cord blood	blood
35	chr11:74977200-74985400	Strong transcription	Brain Cingulate Gyrus	brain
36	chr11:74977400-74990400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:74977600-74983600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:74977600-74985400	Strong transcription	Brain Substantia Nigra	brain
39	chr11:74977600-74986200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:74977800-74986800	Weak transcription	Stomach Mucosa	stomach
41	chr11:74978200-74985600	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr11:74978200-74986000	Strong transcription	Placenta	Placenta
43	chr11:74978400-74983400	Weak transcription	Dnd41	blood
44	chr11:74978400-74990400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr11:74978600-74984200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:74978600-74984600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:74978600-74985600	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:74978600-74995000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:74979000-74984000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:74979000-74984000	Strong transcription	Monocytes-CD14+_RO01746	blood

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