Variant report

Variant	rs35238955
Chromosome Location	chr11:120182578-120182579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120179013..120183815-chr11:120184501..120187839,4	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10790376	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892561	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217816	0.86[EUR][1000 genomes]
rs4938795	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7102217	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7108217	0.82[AFR][1000 genomes]
rs7122401	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120176000-120183600	Weak transcription	Small Intestine	intestine
2	chr11:120176400-120187400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:120177200-120187600	Weak transcription	Gastric	stomach
4	chr11:120177800-120187200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:120177800-120187400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:120178000-120184800	Weak transcription	NHEK	skin
7	chr11:120178000-120187200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:120178000-120187400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:120178200-120184800	Weak transcription	Placenta	Placenta
10	chr11:120178200-120187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:120178200-120187800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:120178400-120187400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:120179000-120187200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:120179200-120187200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:120179400-120187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:120180400-120185800	Weak transcription	Esophagus	oesophagus
17	chr11:120180600-120183800	Enhancers	Duodenum Mucosa	Duodenum
18	chr11:120180800-120183000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:120181000-120185600	Weak transcription	Lung	lung
20	chr11:120181200-120182600	Enhancers	Fetal Intestine Large	intestine
21	chr11:120181200-120182600	Enhancers	Fetal Intestine Small	intestine
22	chr11:120181800-120182600	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr11:120182200-120183600	Weak transcription	HSMMtube	muscle
24	chr11:120182200-120187200	Weak transcription	Colonic Mucosa	Colon
25	chr11:120182400-120187000	Weak transcription	Stomach Mucosa	stomach

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