Variant report

Variant	rs7108217
Chromosome Location	chr11:120183794-120183795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120179013..120183815-chr11:120184501..120187839,4	MCF-7	breast:
2	chr11:120173473..120178843-chr11:120183667..120189130,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10790376	0.80[AFR][1000 genomes]
rs11605781	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12787658	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35238955	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120176400-120187400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:120177200-120187600	Weak transcription	Gastric	stomach
3	chr11:120177800-120187200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:120177800-120187400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:120178000-120184800	Weak transcription	NHEK	skin
6	chr11:120178000-120187200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:120178000-120187400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:120178200-120184800	Weak transcription	Placenta	Placenta
9	chr11:120178200-120187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:120178200-120187800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:120178400-120187400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:120179000-120187200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:120179200-120187200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:120179400-120187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:120180400-120185800	Weak transcription	Esophagus	oesophagus
16	chr11:120180600-120183800	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:120181000-120185600	Weak transcription	Lung	lung
18	chr11:120182200-120187200	Weak transcription	Colonic Mucosa	Colon
19	chr11:120182400-120187000	Weak transcription	Stomach Mucosa	stomach
20	chr11:120182600-120184800	Weak transcription	Fetal Intestine Large	intestine
21	chr11:120182600-120185000	Weak transcription	Fetal Intestine Small	intestine
22	chr11:120182600-120185400	Weak transcription	Right Atrium	heart
23	chr11:120182600-120187000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:120183600-120183800	Enhancers	Small Intestine	intestine
25	chr11:120183600-120184000	Enhancers	HSMMtube	muscle
26	chr11:120183600-120184200	Enhancers	Rectal Mucosa Donor 31	rectum

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