Variant report
| Variant | rs35243146 |
|---|---|
| Chromosome Location | chr6:88133125-88133126 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272514 | Chromatin interaction |
| ENSG00000164414 | Chromatin interaction |
| ENSG00000213204 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12529618 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12529631 | 1.00[AMR][1000 genomes] |
| rs12530034 | 1.00[AMR][1000 genomes] |
| rs13192579 | 1.00[AMR][1000 genomes] |
| rs13197065 | 0.85[AMR][1000 genomes] |
| rs13198605 | 1.00[AMR][1000 genomes] |
| rs13205397 | 1.00[AMR][1000 genomes] |
| rs13217556 | 1.00[AMR][1000 genomes] |
| rs13217637 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13218502 | 0.85[AMR][1000 genomes] |
| rs13219364 | 1.00[AMR][1000 genomes] |
| rs13220737 | 1.00[AMR][1000 genomes] |
| rs16879293 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16879295 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34144911 | 1.00[AMR][1000 genomes] |
| rs34294674 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34373986 | 1.00[AMR][1000 genomes] |
| rs34592526 | 1.00[AMR][1000 genomes] |
| rs34726630 | 1.00[AMR][1000 genomes] |
| rs35580717 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35822597 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs45563737 | 1.00[AMR][1000 genomes] |
| rs58735049 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60711734 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs66632635 | 0.85[AMR][1000 genomes] |
| rs66786089 | 1.00[AMR][1000 genomes] |
| rs66805147 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs66819255 | 1.00[AMR][1000 genomes] |
| rs67569613 | 1.00[AMR][1000 genomes] |
| rs71572754 | 0.83[AMR][1000 genomes] |
| rs71572757 | 0.83[AMR][1000 genomes] |
| rs71572758 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018155 | chr6:88049729-88272862 | Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv830722 | chr6:88054186-88223625 | Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031961 | chr6:88110401-88367006 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
