Variant report

Variant	rs71572754
Chromosome Location	chr6:88090450-88090451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf164-2	chr6:88090354-88091628	NONHSAT113901

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12529618	0.83[AMR][1000 genomes]
rs12529631	0.83[AMR][1000 genomes]
rs12530034	0.83[AMR][1000 genomes]
rs13192579	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13197065	0.85[EUR][1000 genomes]
rs13198605	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13205397	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13217556	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13217637	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13218502	0.89[EUR][1000 genomes]
rs13219364	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13220737	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16879293	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16879295	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2875534	0.89[EUR][1000 genomes]
rs34144911	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34294674	0.83[AMR][1000 genomes]
rs34373986	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34592526	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34726630	0.83[AMR][1000 genomes]
rs34914404	0.89[EUR][1000 genomes]
rs35243146	0.83[AMR][1000 genomes]
rs35562204	0.85[EUR][1000 genomes]
rs35580717	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35756344	0.89[EUR][1000 genomes]
rs35822597	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs45563737	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58735049	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60711734	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6454604	0.89[EUR][1000 genomes]
rs66786089	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66805147	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66819255	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67569613	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67776922	0.89[EUR][1000 genomes]
rs71572755	0.89[EUR][1000 genomes]
rs71572757	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71572758	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71572762	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:88061600-88094600	Weak transcription	Left Ventricle	heart
4	chr6:88080200-88093800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:88090400-88090600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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