Variant report

Variant	rs35244838
Chromosome Location	chr3:49923739-49923740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49918643..49920553-chr3:49922837..49925319,3	MCF-7	breast:
2	chr3:49918459..49920341-chr3:49922556..49924105,2	K562	blood:
3	chr3:49908717..49910264-chr3:49922246..49924394,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1320313	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34797274	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35871951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1809827	chr3:49812331-49934179	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv876766	chr3:49817450-49961780	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv876767	chr3:49918751-50153356	Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49918800-49928400	Weak transcription	Colonic Mucosa	Colon
2	chr3:49919000-49924000	Weak transcription	Gastric	stomach
3	chr3:49919000-49924000	Weak transcription	Lung	lung
4	chr3:49919000-49924200	Weak transcription	Hela-S3	cervix
5	chr3:49919400-49924000	Weak transcription	K562	blood
6	chr3:49919400-49924200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:49919400-49928600	Weak transcription	Esophagus	oesophagus
8	chr3:49919600-49924000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:49919600-49924000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:49919600-49926400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:49919600-49933400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:49919600-49933400	Weak transcription	Stomach Mucosa	stomach
13	chr3:49919600-49937800	Weak transcription	Small Intestine	intestine
14	chr3:49919800-49924000	Weak transcription	NHEK	skin
15	chr3:49919800-49926600	Weak transcription	Spleen	Spleen
16	chr3:49919800-49933800	Weak transcription	Brain Angular Gyrus	brain
17	chr3:49920000-49924000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:49920000-49924000	Weak transcription	Fetal Brain Female	brain
19	chr3:49920000-49926200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:49920000-49930200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:49920000-49943000	Weak transcription	Brain Anterior Caudate	brain
22	chr3:49920200-49924000	Weak transcription	Fetal Stomach	stomach
23	chr3:49920200-49924200	Weak transcription	Right Atrium	heart
24	chr3:49920200-49932600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:49920200-49932600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:49920200-49938400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:49920400-49938200	Weak transcription	Left Ventricle	heart
28	chr3:49920600-49938200	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:49920600-49938200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:49921000-49924000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:49921800-49924200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:49921800-49926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:49921800-49928600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:49922600-49935400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:49922800-49924600	Weak transcription	HMEC	breast
36	chr3:49923200-49924000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:49923200-49924000	Weak transcription	Fetal Intestine Small	intestine
38	chr3:49923400-49923800	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links