Variant report

Variant	rs35871951
Chromosome Location	chr3:49930176-49930177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49927426..49930206-chr3:49934919..49938158,3	K562	blood:

Variant related genes	Relation type
ENSG00000230698	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1320313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34797274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35244838	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35490761	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1809827	chr3:49812331-49934179	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv876766	chr3:49817450-49961780	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv876767	chr3:49918751-50153356	Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49919600-49933400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:49919600-49933400	Weak transcription	Stomach Mucosa	stomach
3	chr3:49919600-49937800	Weak transcription	Small Intestine	intestine
4	chr3:49919800-49933800	Weak transcription	Brain Angular Gyrus	brain
5	chr3:49920000-49930200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:49920000-49943000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:49920200-49932600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:49920200-49932600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:49920200-49938400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:49920400-49938200	Weak transcription	Left Ventricle	heart
11	chr3:49920600-49938200	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:49920600-49938200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:49922600-49935400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:49924000-49930200	Strong transcription	NHEK	skin
15	chr3:49924000-49936000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:49924000-49937600	Strong transcription	Fetal Stomach	stomach
17	chr3:49924200-49932600	Weak transcription	Pancreas	Pancrea
18	chr3:49924600-49937600	Weak transcription	K562	blood
19	chr3:49924800-49938200	Weak transcription	Right Ventricle	heart
20	chr3:49925000-49930400	Strong transcription	Fetal Intestine Small	intestine
21	chr3:49925200-49941200	Weak transcription	Brain Germinal Matrix	brain
22	chr3:49926600-49938400	Weak transcription	Aorta	Aorta
23	chr3:49926800-49932600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:49927000-49932600	Weak transcription	Spleen	Spleen
25	chr3:49927000-49938000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:49927400-49936800	Weak transcription	Fetal Thymus	thymus
27	chr3:49927400-49937600	Weak transcription	Placenta	Placenta
28	chr3:49927600-49940400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:49928200-49932000	Weak transcription	HMEC	breast
30	chr3:49928600-49943000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:49928800-49932400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:49929000-49931800	Weak transcription	Fetal Intestine Large	intestine
33	chr3:49929000-49933000	Weak transcription	Fetal Brain Female	brain
34	chr3:49929000-49938400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:49929400-49931800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr3:49929400-49931800	Weak transcription	Hela-S3	cervix
37	chr3:49929400-49932000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr3:49929400-49932600	Weak transcription	Colonic Mucosa	Colon
39	chr3:49929400-49932600	Weak transcription	Esophagus	oesophagus
40	chr3:49929400-49932600	Weak transcription	Lung	lung
41	chr3:49929600-49931800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr3:49929600-49941200	Weak transcription	Ovary	ovary
43	chr3:49929800-49932000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr3:49930000-49931400	Weak transcription	Gastric	stomach
45	chr3:49930000-49932400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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