Variant report

Variant	rs35245274
Chromosome Location	chr8:34706890-34706891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10106448	1.00[EUR][1000 genomes]
rs10109613	1.00[EUR][1000 genomes]
rs11990228	0.85[AMR][1000 genomes]
rs12334360	1.00[EUR][1000 genomes]
rs16883134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16883139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28579973	1.00[EUR][1000 genomes]
rs55726672	0.85[AMR][1000 genomes]
rs60838421	0.85[AMR][1000 genomes]
rs61499746	0.85[AMR][1000 genomes]
rs6999558	1.00[EUR][1000 genomes]
rs7003487	0.85[AMR][1000 genomes]
rs7821238	1.00[EUR][1000 genomes]
rs7833796	1.00[EUR][1000 genomes]
rs7846668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465635	chr8:34631970-34710118	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv610932	chr8:34631970-34710118	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv465636	chr8:34649550-34710118	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv610933	chr8:34649550-34710118	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv6148	chr8:34669644-34714096	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34703800-34708400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:34705400-34714400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:34705600-34710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:34705600-34714400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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