Variant report
| Variant | rs352528 |
|---|---|
| Chromosome Location | chr6:69200468-69200469 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | EP300 | chr6:69200312-69200673 | SK-N-SH_RA | brain: | n/a | n/a |
| 2 | EP300 | chr6:69200269-69200697 | SK-N-SH_RA | brain: | n/a | n/a |
| 3 | GATA3 | chr6:69200172-69200680 | SH-SY5Y | brain: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266675 | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs6455289 | 0.87[ASN][1000 genomes] |
| rs9294799 | 0.90[ASN][1000 genomes] |
| rs9346213 | 0.90[ASN][1000 genomes] |
| rs9346219 | 0.87[ASN][1000 genomes] |
| rs9351724 | 0.90[ASN][1000 genomes] |
| rs9354780 | 0.87[ASN][1000 genomes] |
| rs9363950 | 0.87[ASN][1000 genomes] |
| rs9446033 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3415097 | chr6:68536406-69244164 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv886130 | chr6:68950298-69531957 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020545 | chr6:69119445-69310136 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv463147 | chr6:69185660-69242020 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv603607 | chr6:69185660-69242020 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv830680 | chr6:69192214-69351103 | Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
