Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69266569..69269694-chr6:69271036..69273043,3	K562	blood:
2	chr6:69263146..69264657-chr6:69267088..69269602,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10498865	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1490618	0.81[EUR][1000 genomes]
rs352527	0.87[CHB][hapmap]
rs352528	0.87[ASN][1000 genomes]
rs6455291	0.81[ASN][1000 genomes]
rs7747988	0.81[ASN][1000 genomes]
rs7754996	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7768234	0.80[AMR][1000 genomes]
rs9294799	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9294803	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9342721	0.80[ASN][1000 genomes]
rs9346199	0.81[EUR][1000 genomes]
rs9346213	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346219	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346221	0.86[CHB][hapmap]
rs9351724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9351729	0.80[ASN][1000 genomes]
rs9354761	0.81[EUR][1000 genomes]
rs9354780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354786	0.81[ASN][1000 genomes]
rs9363932	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs9363950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9363955	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9446033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1020545	chr6:69119445-69310136	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69268600-69269200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69268800-69269200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:69268800-69269200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69268800-69269800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:69268800-69270200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:69268800-69270400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:69268800-69270400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:69268800-69270400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:69268800-69271200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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