Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10498865	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6455289	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6455291	0.97[ASN][1000 genomes]
rs7747988	0.97[ASN][1000 genomes]
rs7754996	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7768234	0.92[ASN][1000 genomes]
rs7768410	0.93[ASN][1000 genomes]
rs7769419	0.92[ASN][1000 genomes]
rs9294799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9342721	0.96[ASN][1000 genomes]
rs9346213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9346219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9346221	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs9351724	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9351729	0.96[ASN][1000 genomes]
rs9354780	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9354786	0.97[ASN][1000 genomes]
rs9354787	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9354788	0.94[ASN][1000 genomes]
rs9363950	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9363953	0.92[ASN][1000 genomes]
rs9363955	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9446033	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1020545	chr6:69119445-69310136	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3343013	chr6:69269931-69271929	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3404499	chr6:69270381-69271529	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69268800-69271200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:69269800-69270600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:69269800-69272400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:69270400-69270600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69270400-69271000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:69270400-69271600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:69270400-69272000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: