Variant report

Variant	rs9354788
Chromosome Location	chr6:69286052-69286053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69283640..69286439-chr6:69288403..69290275,2	K562	blood:
2	chr6:69285861..69288826-chr6:69344334..69346177,2	K562	blood:

Variant related genes	Relation type
ENSG00000135298	Chromatin interaction
ENSG00000230910	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10498865	0.99[ASN][1000 genomes]
rs6455291	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7747988	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754996	0.99[ASN][1000 genomes]
rs7768234	0.99[ASN][1000 genomes]
rs7768410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7769419	0.99[ASN][1000 genomes]
rs9294803	0.94[ASN][1000 genomes]
rs9342721	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9346221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351729	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9354786	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9354787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9363953	0.98[ASN][1000 genomes]
rs9363955	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1020545	chr6:69119445-69310136	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69285200-69286800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:69285600-69286200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:69285600-69286200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:69285800-69286200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:69285800-69286200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:69285800-69286200	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:69285800-69286200	Active TSS	Brain Hippocampus Middle	brain
8	chr6:69285800-69286200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr6:69285800-69286400	Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:69285800-69286400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:69285800-69286400	Active TSS	Brain Angular Gyrus	brain
12	chr6:69285800-69286400	Active TSS	Brain Cingulate Gyrus	brain
13	chr6:69285800-69286400	Active TSS	Brain Germinal Matrix	brain
14	chr6:69285800-69286400	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:69285800-69286400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:69285800-69286400	Active TSS	Brain Substantia Nigra	brain
17	chr6:69285800-69286400	Active TSS	Fetal Kidney	kidney
18	chr6:69285800-69286600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr6:69285800-69286600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:69285800-69286600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:69285800-69286600	Active TSS	Brain Anterior Caudate	brain
22	chr6:69286000-69286200	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:69286000-69286200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:69286000-69286200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:69286000-69286200	Enhancers	Left Ventricle	heart
26	chr6:69286000-69286200	Flanking Active TSS	Pancreas	Pancrea
27	chr6:69286000-69286400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:69286000-69286400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:69286000-69286400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:69286000-69286400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:69286000-69286400	Active TSS	Fetal Stomach	stomach
32	chr6:69286000-69286400	Active TSS	K562	blood
33	chr6:69286000-69286600	Active TSS	Fetal Lung	lung

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