Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69285861..69288826-chr6:69344334..69346177,2	K562	blood:
2	chr6:69286611..69288197-chr6:69290507..69292702,2	K562	blood:

Variant related genes	Relation type
ENSG00000230910	Chromatin interaction
ENSG00000135298	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10498865	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6455289	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6455291	0.96[ASN][1000 genomes]
rs7747988	0.96[ASN][1000 genomes]
rs7768234	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7768410	1.00[ASN][1000 genomes]
rs7769419	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9294799	0.82[EUR][1000 genomes]
rs9294803	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9342721	0.94[ASN][1000 genomes]
rs9346213	0.82[EUR][1000 genomes]
rs9346219	0.85[EUR][1000 genomes]
rs9346221	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs9351724	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9351729	0.94[ASN][1000 genomes]
rs9354780	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9354786	0.96[ASN][1000 genomes]
rs9354787	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9354788	0.99[ASN][1000 genomes]
rs9363950	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9363953	0.97[ASN][1000 genomes]
rs9363955	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9446033	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1020545	chr6:69119445-69310136	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69286200-69289600	Weak transcription	Left Ventricle	heart

Quick Search: