Variant report

Variant	rs35253638
Chromosome Location	chr6:36759344-36759345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36731113..36733577-chr6:36757707..36759344,2	MCF-7	breast:
2	chr6:36758069..36759935-chr6:36761905..36763560,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34582503	1.00[EUR][1000 genomes]
rs35744485	0.86[EUR][1000 genomes]
rs3734335	0.83[EUR][1000 genomes]
rs67330617	0.87[ASN][1000 genomes]
rs67362112	0.94[EUR][1000 genomes]
rs9366916	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv818413	chr6:36755402-36759768	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv991181	chr6:36757252-36768835	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35253638	PSMD2	trans	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
2	chr6:36757200-36759400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:36757200-36759400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:36757200-36761200	Weak transcription	Fetal Kidney	kidney
5	chr6:36757200-36762400	Weak transcription	Brain Substantia Nigra	brain
6	chr6:36757400-36761400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:36757600-36760000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:36757600-36760800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:36757600-36761000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:36757600-36761000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:36757600-36761000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:36757600-36761600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:36757600-36761600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:36757600-36761800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:36757800-36759400	Weak transcription	Fetal Lung	lung
16	chr6:36757800-36759600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:36757800-36759600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:36757800-36760800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:36757800-36760800	Weak transcription	Ovary	ovary
20	chr6:36757800-36761600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:36758800-36759400	Enhancers	Fetal Stomach	stomach
22	chr6:36758800-36759600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:36758800-36762600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:36759000-36759600	Enhancers	Spleen	Spleen
25	chr6:36759000-36761800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:36759000-36762600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:36759200-36759400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:36759200-36761000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:36759200-36762400	Enhancers	Fetal Brain Male	brain
30	chr6:36759200-36762800	Enhancers	Brain Germinal Matrix	brain

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