Variant report

Variant	rs3734335
Chromosome Location	chr6:36762183-36762184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36760519..36762728-chr6:36768934..36770860,2	K562	blood:
2	chr6:36758069..36759935-chr6:36761905..36763560,2	K562	blood:
3	chr6:36753279..36755251-chr6:36760593..36763475,2	MCF-7	breast:
4	chr6:36759502..36762298-chr6:36813036..36815404,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34582503	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35253638	0.83[EUR][1000 genomes]
rs35744485	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv991181	chr6:36757252-36768835	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
2	chr6:36757200-36762400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:36758800-36762600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:36759000-36762600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:36759200-36762400	Enhancers	Fetal Brain Male	brain
6	chr6:36759200-36762800	Enhancers	Brain Germinal Matrix	brain
7	chr6:36759400-36762600	Enhancers	Fetal Lung	lung
8	chr6:36759600-36762800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:36760000-36762400	Bivalent Enhancer	Fetal Stomach	stomach
10	chr6:36760000-36762600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:36760000-36762600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr6:36760600-36762800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:36760800-36762600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:36760800-36762600	Enhancers	Ovary	ovary
15	chr6:36760800-36762800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:36760800-36762800	Enhancers	Brain Anterior Caudate	brain
17	chr6:36761000-36762400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:36761000-36762600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:36761200-36762600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:36761200-36762600	Enhancers	Fetal Kidney	kidney
21	chr6:36761400-36762400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36761400-36762600	Enhancers	Brain Hippocampus Middle	brain
23	chr6:36761400-36762800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:36761400-36762800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:36761400-36763000	Enhancers	Fetal Muscle Leg	muscle
26	chr6:36761600-36762200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:36761600-36762200	Bivalent Enhancer	Placenta	Placenta
28	chr6:36761600-36762400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:36761600-36762400	Enhancers	GM12878-XiMat	blood
30	chr6:36761600-36762600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr6:36761600-36762800	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:36761600-36763000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr6:36761800-36762600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:36761800-36762600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:36762000-36762400	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:36762000-36762600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:36762000-36762600	Enhancers	Brain Angular Gyrus	brain
38	chr6:36762000-36762800	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr6:36762000-36763400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr6:36762000-36772200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:36762000-36772800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links