Variant report

Variant	rs35261
Chromosome Location	chr5:58631470-58631471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs154024	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs154031	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs244573	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs244574	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs244577	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35258	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35267	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35276	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs35278	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs35279	0.91[EUR][1000 genomes]
rs35283	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs35284	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs39672	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs40122	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs40328	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58625000-58632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:58625000-58632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:58625000-58632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
5	chr5:58627200-58634400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:58630800-58631800	Enhancers	Colon Smooth Muscle	Colon
8	chr5:58631000-58632200	Enhancers	Brain Hippocampus Middle	brain
9	chr5:58631000-58633600	Enhancers	Brain Substantia Nigra	brain
10	chr5:58631000-58635800	Enhancers	A549	lung
11	chr5:58631000-58636000	Enhancers	Fetal Heart	heart
12	chr5:58631200-58632000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:58631200-58632200	Enhancers	Brain Cingulate Gyrus	brain
14	chr5:58631200-58634600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:58631400-58632400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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