Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs154031	0.89[AFR][1000 genomes]
rs2441091	1.00[YRI][hapmap]
rs244573	0.87[AFR][1000 genomes]
rs244575	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs244577	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs244579	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs244588	1.00[YRI][hapmap]
rs35258	0.84[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35261	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs35263	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35267	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs35274	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35276	1.00[YRI][hapmap]
rs35277	0.93[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35278	1.00[YRI][hapmap]
rs35279	0.83[AFR][1000 genomes]
rs35284	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs39672	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs40122	0.89[CHB][hapmap]
rs40126	0.93[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs40328	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs434274	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030716	chr5:58636116-58718362	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032732	chr5:58637179-58689010	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
2	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:58634400-58647800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:58635200-58640200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:58635200-58652600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:58637200-58638600	Weak transcription	A549	lung
7	chr5:58637200-58646000	Weak transcription	Psoas Muscle	Psoas
8	chr5:58637400-58638400	Enhancers	Fetal Heart	heart
9	chr5:58637400-58639200	Enhancers	Fetal Brain Male	brain
10	chr5:58637600-58638600	Enhancers	Primary T cells from cord blood	blood
11	chr5:58637600-58638600	Enhancers	Fetal Thymus	thymus

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