Variant report

Variant	rs35263
Chromosome Location	chr5:58630265-58630266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs244574	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs244575	0.93[EUR][1000 genomes]
rs35274	0.89[EUR][1000 genomes]
rs35277	0.89[EUR][1000 genomes]
rs40126	0.89[EUR][1000 genomes]
rs40328	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58625000-58632000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:58625000-58632400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:58625000-58632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:58625000-58644600	Weak transcription	Left Ventricle	heart
5	chr5:58625400-58630800	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:58626800-58631000	Weak transcription	Psoas Muscle	Psoas
7	chr5:58627200-58634400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:58627400-58641600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:58629400-58631000	Weak transcription	Fetal Heart	heart
10	chr5:58629600-58631000	Weak transcription	Fetal Lung	lung
11	chr5:58629600-58631000	Weak transcription	A549	lung
12	chr5:58630000-58631200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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