Variant report

Variant	rs35275385
Chromosome Location	chr20:23851935-23851936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11698737	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11698834	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11699452	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11699520	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2071444	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34269359	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35138163	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35557175	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35722487	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4322904	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4642010	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036561	0.88[EUR][1000 genomes]
rs6049191	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6049196	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6049197	0.88[EUR][1000 genomes]
rs6132677	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6132678	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6132679	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6138130	0.80[EUR][1000 genomes]
rs6138131	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6138146	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6138148	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6138149	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6138150	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6138151	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6138152	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138153	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6515431	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6515432	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66754062	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67121560	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8182947	0.80[EUR][1000 genomes]
rs8184710	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv585730	chr20:23809681-23862844	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23847000-23852400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr20:23848200-23853400	Weak transcription	Thymus	Thymus
3	chr20:23848600-23852000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr20:23848800-23860400	Enhancers	Fetal Thymus	thymus
5	chr20:23849200-23852000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:23849400-23852200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr20:23849600-23852400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr20:23849800-23852400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr20:23849800-23852400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr20:23849800-23852400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr20:23849800-23852400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr20:23850000-23852400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr20:23850400-23852200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr20:23850800-23853000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr20:23851200-23853200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr20:23851400-23859400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:23851600-23852200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr20:23851600-23852200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr20:23851600-23852800	Weak transcription	Dnd41	blood
20	chr20:23851800-23855400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links