Variant report

Variant	rs6138152
Chromosome Location	chr20:23850130-23850131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11698737	0.85[EUR][1000 genomes]
rs11698834	0.86[EUR][1000 genomes]
rs11699452	0.86[EUR][1000 genomes]
rs11699520	0.86[EUR][1000 genomes]
rs2071444	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34269359	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35138163	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35275385	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35557175	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35722487	0.85[EUR][1000 genomes]
rs4322904	0.86[EUR][1000 genomes]
rs4642010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036561	0.92[EUR][1000 genomes]
rs6049191	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6049196	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6049197	0.92[EUR][1000 genomes]
rs6132677	0.83[EUR][1000 genomes]
rs6132678	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6132679	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6138131	0.81[EUR][1000 genomes]
rs6138146	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6138148	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6138149	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6138150	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6138151	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6138153	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6515431	0.83[EUR][1000 genomes]
rs6515432	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66754062	0.86[EUR][1000 genomes]
rs67121560	0.86[EUR][1000 genomes]
rs8182947	0.88[CEU][hapmap];0.85[CHB][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap]
rs8184710	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv585730	chr20:23809681-23862844	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23847000-23852400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr20:23847800-23851600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:23848200-23850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23848200-23850400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr20:23848200-23853400	Weak transcription	Thymus	Thymus
6	chr20:23848600-23851000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:23848600-23852000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr20:23848800-23860400	Enhancers	Fetal Thymus	thymus
9	chr20:23849200-23852000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:23849400-23852200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr20:23849600-23850800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr20:23849600-23852400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr20:23849800-23850200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr20:23849800-23850800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr20:23849800-23851200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr20:23849800-23851600	Enhancers	Dnd41	blood
17	chr20:23849800-23851800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr20:23849800-23852400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr20:23849800-23852400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr20:23849800-23852400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr20:23849800-23852400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr20:23850000-23851200	Enhancers	Brain Cingulate Gyrus	brain
23	chr20:23850000-23852400	Enhancers	HUES48 Cell Line	embryonic stem cell

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