Variant report

Variant	rs35301250
Chromosome Location	chr3:156883221-156883222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16827320	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16827334	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57972438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156879000-156885600	Weak transcription	Psoas Muscle	Psoas
2	chr3:156879000-156891800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:156879000-156892000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:156879200-156884200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:156879200-156884400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:156879200-156884400	Weak transcription	Fetal Kidney	kidney
7	chr3:156879200-156891800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:156879200-156891800	Weak transcription	Fetal Stomach	stomach
9	chr3:156879200-156891800	Weak transcription	Fetal Thymus	thymus
10	chr3:156879200-156892000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:156879400-156891200	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:156879800-156884000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:156879800-156884400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:156879800-156891800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:156880000-156888800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:156880000-156891400	Weak transcription	Placenta	Placenta
17	chr3:156880000-156891400	Weak transcription	GM12878-XiMat	blood
18	chr3:156880200-156884000	Weak transcription	Fetal Intestine Large	intestine
19	chr3:156880200-156888400	Weak transcription	Primary B cells from cord blood	blood
20	chr3:156880200-156891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:156880200-156891800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:156880400-156891600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:156880600-156884400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:156881000-156883600	Weak transcription	Liver	Liver
25	chr3:156881000-156891600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:156881200-156892200	Weak transcription	Small Intestine	intestine
27	chr3:156881800-156888400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:156881800-156892000	Weak transcription	Lung	lung
29	chr3:156882200-156883800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:156882200-156883800	Weak transcription	HepG2	liver
31	chr3:156882200-156884000	Weak transcription	Fetal Intestine Small	intestine
32	chr3:156882800-156884800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:156883000-156885800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links