Variant report

Variant	rs16827334
Chromosome Location	chr3:156956000-156956001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10513514	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs16827320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827620	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2062608	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs35301250	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57972438	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639767	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7652804	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs951198	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156949600-156956800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:156950600-156957000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156953200-156957200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:156954200-156956800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:156954600-156957400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:156954800-156956600	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:156954800-156957400	Enhancers	Fetal Stomach	stomach
8	chr3:156955000-156957200	Enhancers	Stomach Smooth Muscle	stomach
9	chr3:156955200-156957400	Enhancers	Colon Smooth Muscle	Colon
10	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
11	chr3:156955600-156956000	Enhancers	Fetal Lung	lung
12	chr3:156955600-156956600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:156955600-156957200	Weak transcription	Primary T cells from cord blood	blood
14	chr3:156955600-156959400	Enhancers	Osteobl	bone
15	chr3:156955800-156956000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
17	chr3:156956000-156956400	Weak transcription	NHDF-Ad	bronchial
18	chr3:156956000-156957000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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