Variant report

Variant	rs7639767
Chromosome Location	chr3:157135595-157135596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513514	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11718332	0.84[CHB][hapmap]
rs12489754	0.84[CHB][hapmap]
rs12491052	0.84[CHB][hapmap]
rs12491934	0.83[CHB][hapmap]
rs1500913	0.84[CHB][hapmap]
rs1500914	0.84[CHB][hapmap]
rs1566520	0.92[CHB][hapmap]
rs16827334	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs16827620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062608	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60201093	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60515336	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60695238	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73016284	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73016300	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73018263	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73020257	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73020261	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7652804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924515	0.84[CHB][hapmap]
rs951198	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:157120200-157135800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:157124400-157135800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:157127000-157141800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:157128200-157138600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157134200-157136200	Enhancers	HSMM	muscle
9	chr3:157134200-157136200	Enhancers	NHDF-Ad	bronchial
10	chr3:157134400-157136200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:157134400-157136400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:157134800-157136000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:157134800-157136200	Enhancers	NHEK	skin
14	chr3:157134800-157136200	Enhancers	NHLF	lung
15	chr3:157134800-157136200	Enhancers	Osteobl	bone
16	chr3:157134800-157136400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:157134800-157136400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:157135000-157136000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:157135000-157136000	Enhancers	Spleen	Spleen
20	chr3:157135000-157136000	Enhancers	Hela-S3	cervix
21	chr3:157135000-157136000	Flanking Active TSS	HUVEC	blood vessel
22	chr3:157135000-157136200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:157135000-157136200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:157135000-157136200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:157135000-157136200	Enhancers	NH-A	brain
26	chr3:157135000-157136400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:157135400-157135800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:157135400-157136200	Flanking Active TSS	HSMMtube	muscle

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