Variant report

Variant	rs73016300
Chromosome Location	chr3:157019347-157019348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513514	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16827620	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16827623	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2062608	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60201093	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60515336	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60695238	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73016284	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73018263	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73020257	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73020261	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7639767	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7652804	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs951198	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157013000-157032600	Weak transcription	NH-A	brain
3	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:157015400-157019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:157017400-157019400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:157017400-157019400	Enhancers	NHDF-Ad	bronchial
8	chr3:157018200-157020200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:157019000-157029000	Weak transcription	NHLF	lung
10	chr3:157019200-157019400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:157019200-157020200	Enhancers	K562	blood
12	chr3:157019200-157023000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:157019200-157028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:157019200-157028400	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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