Variant report

Variant	rs16827623
Chromosome Location	chr3:157138994-157138995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513514	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16827620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062608	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60201093	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60515336	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60695238	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73016284	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73016300	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73018263	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73020257	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73020261	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7639767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652804	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951198	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:157127000-157141800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:157136000-157142800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157136200-157140200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:157136200-157140600	Weak transcription	HSMMtube	muscle
8	chr3:157136200-157141000	Weak transcription	NH-A	brain
9	chr3:157136200-157141000	Weak transcription	NHDF-Ad	bronchial
10	chr3:157136200-157145800	Weak transcription	NHLF	lung
11	chr3:157136200-157146800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:157136400-157140800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:157136400-157141000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:157138000-157139600	Enhancers	HUVEC	blood vessel
15	chr3:157138400-157139000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:157138600-157139000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:157138600-157139600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:157138600-157141000	Weak transcription	HSMM	muscle
19	chr3:157138800-157141000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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