Variant report

Variant	rs73018263
Chromosome Location	chr3:157097334-157097335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157096612..157098371-chr3:157102022..157103656,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16827620	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16827623	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2062608	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60201093	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60515336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60695238	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73016284	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73016300	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73020257	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73020261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7639767	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7652804	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs951198	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157083600-157105800	Weak transcription	HSMM	muscle
3	chr3:157088000-157108600	Weak transcription	Lung	lung
4	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
7	chr3:157094200-157106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:157094200-157106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:157094200-157106200	Weak transcription	NH-A	brain
10	chr3:157095000-157101200	Weak transcription	Fetal Brain Male	brain
11	chr3:157095000-157101400	Weak transcription	Fetal Lung	lung
12	chr3:157095000-157105200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:157095000-157105400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:157095200-157098200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:157095200-157106600	Weak transcription	Osteobl	bone
16	chr3:157095800-157099200	Strong transcription	HUVEC	blood vessel
17	chr3:157096000-157097400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:157096000-157097600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:157096400-157100200	Enhancers	NHDF-Ad	bronchial
20	chr3:157096600-157099600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:157096800-157097800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:157096800-157098200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:157097200-157097600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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