Variant report

Variant	rs11718332
Chromosome Location	chr3:157051499-157051500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10513514	0.92[CHB][hapmap]
rs10936082	0.82[MEX][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11709487	0.80[TSI][hapmap]
rs12489754	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490031	0.80[TSI][hapmap]
rs12491052	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491378	0.82[MEX][hapmap]
rs12491904	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs12491934	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496692	0.83[EUR][1000 genomes]
rs1500913	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500914	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566520	0.87[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16827620	0.84[CHB][hapmap]
rs17388505	0.80[TSI][hapmap]
rs1915952	0.82[CEU][hapmap]
rs2062608	0.82[CHB][hapmap]
rs2090925	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55735313	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56210074	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333827	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56372031	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60979231	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427794	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7639767	0.84[CHB][hapmap]
rs7652804	0.84[CHB][hapmap]
rs924515	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951198	1.00[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11718332	C3orf55	cis	cerebellum	SCAN
rs11718332	SSR3	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
3	chr3:157048000-157054600	Enhancers	NHDF-Ad	bronchial
4	chr3:157048200-157057000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:157049400-157051800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:157049600-157051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:157049800-157051600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:157050000-157051600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:157050400-157054800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:157050600-157054600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:157051000-157052200	Enhancers	NH-A	brain
12	chr3:157051000-157053600	Enhancers	Osteobl	bone
13	chr3:157051000-157054000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:157051000-157054200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:157051000-157054800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:157051000-157054800	Enhancers	NHLF	lung
17	chr3:157051000-157056200	Enhancers	HUVEC	blood vessel
18	chr3:157051200-157052400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:157051200-157052800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:157051400-157051600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:157051400-157051600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:157051400-157053400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:157051400-157054200	Enhancers	HSMM	muscle
24	chr3:157051400-157054400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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