Variant report

Variant	rs1500914
Chromosome Location	chr3:157044222-157044223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10513514	0.92[CHB][hapmap]
rs10936082	0.82[MEX][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs11709487	0.88[MEX][hapmap];0.80[TSI][hapmap]
rs11718332	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12489754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12490031	0.88[MEX][hapmap];0.80[TSI][hapmap]
rs12491052	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12491378	0.82[MEX][hapmap]
rs12491904	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs12491934	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12496692	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1500913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566520	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16827620	0.84[CHB][hapmap]
rs17388505	0.88[MEX][hapmap];0.80[TSI][hapmap]
rs1915952	0.86[CEU][hapmap]
rs2062608	0.82[CHB][hapmap]
rs2090925	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55735313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56210074	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56333827	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56372031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60979231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7427794	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7639767	0.84[CHB][hapmap]
rs7652804	0.84[CHB][hapmap]
rs924515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951198	1.00[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1500914	SSR3	cis	cerebellum	SCAN
rs1500914	C3orf55	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030600-157047000	Weak transcription	Osteobl	bone
3	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:157039800-157051000	Weak transcription	HUVEC	blood vessel
6	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
7	chr3:157044000-157045200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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