Variant report

Variant	rs10936082
Chromosome Location	chr3:157051763-157051764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10428149	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11709487	0.95[CEU][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs11718332	0.82[MEX][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12489852	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12490031	0.95[CEU][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12491052	0.82[EUR][1000 genomes]
rs12491378	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs12491934	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1500913	0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs1500914	0.82[MEX][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs1500926	0.95[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs1566520	0.80[TSI][hapmap]
rs17388505	0.95[CEU][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2305621	0.82[ASW][hapmap];0.91[CEU][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap]
rs34650246	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55735313	0.82[EUR][1000 genomes]
rs56003856	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56210074	0.82[EUR][1000 genomes]
rs56333827	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56375731	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60979231	0.82[EUR][1000 genomes]
rs61068670	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61473987	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62279638	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62279639	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62279641	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62281371	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62281372	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62281373	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441125	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67643214	0.88[EUR][1000 genomes]
rs6769039	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6793166	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6803886	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73154694	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7618171	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs924515	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9864194	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10936082	KCNAB1	cis	cerebellum	SCAN
rs10936082	SSR3	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
3	chr3:157048000-157054600	Enhancers	NHDF-Ad	bronchial
4	chr3:157048200-157057000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:157049400-157051800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:157049600-157051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:157050400-157054800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:157050600-157054600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:157051000-157052200	Enhancers	NH-A	brain
10	chr3:157051000-157053600	Enhancers	Osteobl	bone
11	chr3:157051000-157054000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:157051000-157054200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:157051000-157054800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:157051000-157054800	Enhancers	NHLF	lung
15	chr3:157051000-157056200	Enhancers	HUVEC	blood vessel
16	chr3:157051200-157052400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:157051200-157052800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr3:157051400-157053400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:157051400-157054200	Enhancers	HSMM	muscle
20	chr3:157051400-157054400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:157051600-157052600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:157051600-157053600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:157051600-157054800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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