Variant report

Variant	rs9864194
Chromosome Location	chr3:157011183-157011184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157005885..157009539-chr3:157009923..157012607,4	K562	blood:
2	chr3:157008081..157011337-chr3:157013720..157016384,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10428149	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10936082	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11709487	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12489852	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490031	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12491378	0.95[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1500926	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17388505	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305621	0.86[CEU][hapmap]
rs34650246	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003856	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56375731	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61068670	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61473987	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279638	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279639	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279641	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281371	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281372	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281373	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441125	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67643214	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6769039	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793166	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803886	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154644	0.81[EUR][1000 genomes]
rs73154694	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618171	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157003600-157011800	Weak transcription	Fetal Lung	lung
3	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
4	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:157006000-157011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:157007600-157012200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:157009000-157012200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:157009000-157012400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:157009200-157012000	Weak transcription	HSMMtube	muscle
10	chr3:157009200-157012200	Weak transcription	NH-A	brain
11	chr3:157009400-157011200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:157010000-157012200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:157010200-157012000	Weak transcription	NHLF	lung
14	chr3:157010200-157012200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:157010200-157012200	Weak transcription	HSMM	muscle
16	chr3:157010400-157011800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:157010400-157012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:157010400-157012200	Weak transcription	NHDF-Ad	bronchial
19	chr3:157010800-157012200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:157010800-157014800	Enhancers	Osteobl	bone
21	chr3:157010800-157015000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:157011000-157013200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:157011000-157014600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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