Variant report

Variant	rs73154694
Chromosome Location	chr3:157000266-157000267
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr3:157000099-157000986	HUVEC	blood vessel:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
2	MAX	chr3:156999942-157000640	SK-N-SH	brain:	n/a	n/a
3	STAT3	chr3:157000081-157000641	MCF10A-Er-Src	breast:	n/a	chr3:157000206-157000215
4	JUND	chr3:156999889-157000942	SK-N-SH	brain:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
5	PBX3	chr3:156999890-157001264	SK-N-SH	brain:	n/a	n/a
6	FOS	chr3:156999975-157001211	HUVEC	blood vessel:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
7	GATA2	chr3:156999999-157001026	HUVEC	blood vessel:	n/a	chr3:157000511-157000518 chr3:157000809-157000819
8	TEAD4	chr3:156999975-157000829	SK-N-SH	brain:	n/a	n/a
9	TCF12	chr3:156999947-157001056	SK-N-SH	brain:	n/a	n/a
10	RXRA	chr3:156999916-157000726	SK-N-SH	brain:	n/a	chr3:157000433-157000446 chr3:157000434-157000445
11	MAX	chr3:156999910-157000512	SK-N-SH	brain:	n/a	n/a
12	TEAD4	chr3:157000029-157000854	SK-N-SH	brain:	n/a	n/a
13	FOS	chr3:157000062-157000569	MCF10A-Er-Src	breast:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
14	PBX3	chr3:156999943-157000777	SK-N-SH	brain:	n/a	n/a
15	MYC	chr3:156999974-157000515	MCF10A-Er-Src	breast:	n/a	n/a
16	NFIC	chr3:156999944-157001007	SK-N-SH	brain:	n/a	n/a
17	FOS	chr3:157000029-157000501	MCF10A-Er-Src	breast:	n/a	chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000306-157000316
18	USF2	chr3:156999999-157000605	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr3:157000011-157000719	SK-N-SH	brain:	n/a	n/a
20	POLR2A	chr3:156999735-157001231	HUVEC	blood vessel:	n/a	n/a
21	EP300	chr3:157000229-157000711	SK-N-SH_RA	brain:	n/a	n/a
22	POLR2A	chr3:156999959-157000753	HUVEC	blood vessel:	n/a	n/a
23	STAT3	chr3:157000155-157000570	MCF10A-Er-Src	breast:	n/a	chr3:157000206-157000215
24	GATA3	chr3:156999923-157001268	SK-N-SH	brain:	n/a	chr3:157000511-157000518 chr3:157000809-157000819
25	PRDM1	chr3:157000223-157000587	Hela-S3	cervix:	n/a	chr3:157000429-157000438 chr3:157000425-157000439
26	GATA3	chr3:157000041-157001107	SK-N-SH	brain:	n/a	chr3:157000511-157000518 chr3:157000809-157000819
27	FOS	chr3:157000258-157000624	MCF10A-Er-Src	breast:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
28	TCF12	chr3:156999907-157001113	SK-N-SH	brain:	n/a	n/a
29	MXI1	chr3:156999819-157000736	IMR90	lung:	n/a	n/a
30	FOS	chr3:157000045-157000548	MCF10A-Er-Src	breast:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
31	USF1	chr3:156999965-157000689	SK-N-SH	brain:	n/a	n/a
32	CEBPB	chr3:156999911-157000804	IMR90	lung:	n/a	n/a
33	BHLHE40	chr3:157000010-157000637	K562	blood:	n/a	n/a
34	FOSL2	chr3:156999982-157001048	SK-N-SH	brain:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
35	STAT3	chr3:157000093-157000983	MCF10A-Er-Src	breast:	n/a	chr3:157000206-157000215
36	E2F4	chr3:156999932-157000299	MCF10A-Er-Src	breast:	n/a	chr3:157000287-157000296
37	NR3C1	chr3:157000001-157000672	A549	lung:	n/a	chr3:157000159-157000174
38	STAT3	chr3:157000220-157000554	MCF10A-Er-Src	breast:	n/a	n/a
39	POLR2A	chr3:156999928-157000950	HUVEC	blood vessel:	n/a	n/a
40	JUND	chr3:156999959-157000966	SK-N-SH	brain:	n/a	chr3:157000306-157000316 chr3:157000512-157000522 chr3:157000306-157000316 chr3:157000306-157000316 chr3:157000511-157000523
41	MYC	chr3:157000002-157000580	MCF10A-Er-Src	breast:	n/a	n/a
42	EP300	chr3:156999852-157001161	SK-N-SH	brain:	n/a	chr3:157000854-157000868

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156999731..157001800-chr3:157004485..157007413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243176	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10428149	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10936082	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11709487	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12489852	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490031	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12491378	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1500926	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17388505	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34650246	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003856	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56375731	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61068670	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61473987	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279638	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279639	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279641	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281371	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281372	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281373	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441125	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67643214	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6769039	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793166	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803886	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154644	0.83[AMR][1000 genomes]
rs7618171	0.88[AFR][1000 genomes]
rs9864194	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
3	chr3:156997000-157000400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156997000-157001000	Enhancers	Osteobl	bone
5	chr3:156997000-157004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156997600-157003600	Weak transcription	K562	blood
7	chr3:156998000-157000600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:156998200-157000400	Enhancers	HUVEC	blood vessel
9	chr3:156998400-157001800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:156998800-157000400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:156998800-157002000	Enhancers	NHLF	lung
12	chr3:156998800-157006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:156999000-157000400	Weak transcription	Adipose Nuclei	Adipose
14	chr3:156999600-157000400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:156999600-157000600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:156999600-157001200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:156999600-157001200	Enhancers	HSMM	muscle
18	chr3:156999600-157003800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:156999800-157000600	Weak transcription	NHDF-Ad	bronchial
20	chr3:157000000-157000600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:157000000-157000800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:157000000-157001200	Enhancers	NHEK	skin
23	chr3:157000000-157001600	Enhancers	NH-A	brain
24	chr3:157000200-157000600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:157000200-157000800	Enhancers	Brain Anterior Caudate	brain
26	chr3:157000200-157001000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr3:157000200-157001600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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