Variant report

Variant	rs62281373
Chromosome Location	chr3:157017929-157017930
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10428149	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10936082	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11709487	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12489852	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490031	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12491378	0.82[EUR][1000 genomes]
rs1500926	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17388505	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34650246	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003856	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56333827	0.80[AMR][1000 genomes]
rs56375731	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61068670	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61473987	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279638	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279639	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279641	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281371	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281372	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441125	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67643214	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6769039	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793166	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803886	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154694	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864194	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157013000-157018600	Weak transcription	K562	blood
3	chr3:157013000-157032600	Weak transcription	NH-A	brain
4	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:157014400-157018800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:157014400-157019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:157015400-157019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:157017400-157018000	Enhancers	NHLF	lung
10	chr3:157017400-157018200	Enhancers	HSMM	muscle
11	chr3:157017400-157019200	Enhancers	Osteobl	bone
12	chr3:157017400-157019400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:157017400-157019400	Enhancers	NHDF-Ad	bronchial
14	chr3:157017600-157019200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:157017800-157018200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:157017800-157019000	Weak transcription	HSMMtube	muscle

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