Variant report

Variant	rs61068670
Chromosome Location	chr3:157088615-157088616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10428149	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10936082	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489852	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12490031	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17388505	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34650246	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56003856	0.80[ASN][1000 genomes]
rs56375731	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56810791	0.83[AFR][1000 genomes]
rs59876369	0.87[AFR][1000 genomes]
rs61473987	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62279638	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62279639	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62279641	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62281371	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62281372	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62281373	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6769039	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6793166	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6803886	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73154694	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9864194	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157078800-157091600	Weak transcription	NH-A	brain
3	chr3:157081600-157091600	Weak transcription	NHLF	lung
4	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:157083600-157105800	Weak transcription	HSMM	muscle
6	chr3:157083800-157092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
8	chr3:157085000-157091600	Weak transcription	Aorta	Aorta
9	chr3:157086200-157091600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:157086400-157090200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:157086800-157089200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:157086800-157089200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:157086800-157089200	Enhancers	Fetal Lung	lung
14	chr3:157087000-157089000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:157087000-157089400	Enhancers	NHDF-Ad	bronchial
16	chr3:157087000-157089400	Enhancers	Osteobl	bone
17	chr3:157087200-157089000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:157087400-157091400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:157087400-157091400	Weak transcription	Pancreas	Pancrea
20	chr3:157088000-157108600	Weak transcription	Lung	lung
21	chr3:157088200-157090800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:157088200-157091400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:157088200-157093800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:157088400-157089200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:157088400-157091400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:157088400-157092800	Weak transcription	HUVEC	blood vessel
27	chr3:157088600-157091400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--

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