Variant report

Variant	rs7618171
Chromosome Location	chr3:156895190-156895191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156347077..156349787-chr3:156893431..156895606,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10936082	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11709487	0.95[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12490031	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12491378	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1500926	0.95[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17388505	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs56003856	0.81[EUR][1000 genomes]
rs61473987	0.83[EUR][1000 genomes]
rs62279638	0.83[EUR][1000 genomes]
rs62279639	0.83[EUR][1000 genomes]
rs67643214	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6769039	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs6793166	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs6803886	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs73154644	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73154694	0.88[AFR][1000 genomes]
rs9864194	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156893800-156895200	Enhancers	Spleen	Spleen
2	chr3:156894000-156895200	Enhancers	Primary B cells from peripheral blood	blood
3	chr3:156894000-156895200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:156894000-156900800	Weak transcription	Ovary	ovary
5	chr3:156894200-156895200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr3:156894200-156895200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:156894200-156895600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:156894200-156895600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr3:156894200-156896200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:156894200-156896200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:156894200-156896200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:156894200-156896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:156894200-156896200	Weak transcription	Colonic Mucosa	Colon
14	chr3:156894200-156896200	Weak transcription	Fetal Stomach	stomach
15	chr3:156894200-156901600	Weak transcription	Right Atrium	heart
16	chr3:156894200-156903000	Weak transcription	Esophagus	oesophagus
17	chr3:156894400-156895200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:156894400-156895200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:156894400-156895200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr3:156894400-156895200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr3:156894400-156895200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:156894400-156895200	Enhancers	Fetal Intestine Large	intestine
23	chr3:156894400-156895400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:156894400-156895400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr3:156894400-156895400	Weak transcription	Fetal Heart	heart
26	chr3:156894400-156895600	Enhancers	HepG2	liver
27	chr3:156894400-156895800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:156894400-156902400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:156894400-156902800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:156894400-156903000	Weak transcription	HSMM	muscle
31	chr3:156894400-156903200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:156894400-156903400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr3:156894400-156903400	Weak transcription	Brain Angular Gyrus	brain
34	chr3:156894400-156903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
37	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:156894600-156895200	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr3:156894600-156895600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:156894600-156895600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:156894600-156895600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr3:156894600-156895800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr3:156894600-156895800	Enhancers	Colon Smooth Muscle	Colon
44	chr3:156894600-156896000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:156894600-156896000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:156894600-156900000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr3:156894600-156902800	Weak transcription	Liver	Liver
48	chr3:156894600-156902800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:156894600-156903000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:156894600-156903000	Weak transcription	Duodenum Mucosa	Duodenum

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