Variant report

Variant	rs12496692
Chromosome Location	chr3:156987796-156987797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11709487	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11718332	0.83[EUR][1000 genomes]
rs12489754	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12489852	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12490031	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12491052	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12491934	0.83[EUR][1000 genomes]
rs12496611	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1500913	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1500914	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1500926	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1566520	0.81[EUR][1000 genomes]
rs17388505	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1915952	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2090925	0.81[EUR][1000 genomes]
rs55735313	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56003856	0.84[AFR][1000 genomes]
rs56210074	0.83[EUR][1000 genomes]
rs56333827	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56372031	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56375731	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs60979231	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61473987	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62279638	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62279639	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62279641	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs67643214	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6803886	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs924515	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:156967200-157000000	Weak transcription	NH-A	brain
4	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156982400-156992800	Weak transcription	Osteobl	bone
9	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
11	chr3:156987600-156989200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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