Variant report

Variant	rs35309726
Chromosome Location	chr8:125480802-125480803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125459763..125466594-chr8:125480347..125488760,16	K562	blood:
2	chr8:125480277..125483193-chr8:125562791..125565125,2	MCF-7	breast:
3	chr8:125461376..125463679-chr8:125479690..125481868,2	MCF-7	breast:
4	chr8:125479891..125482366-chr8:125486575..125489268,2	K562	blood:
5	chr8:125461213..125466499-chr8:125476927..125481847,6	K562	blood:

Variant related genes	Relation type
ENSG00000245149	Chromatin interaction
ENSG00000183665	Chromatin interaction
ENSG00000170881	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1131024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13250890	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13254054	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13263130	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13264071	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13269215	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13276295	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17298010	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34008273	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34115246	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34681068	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34684627	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34714561	0.82[EUR][1000 genomes]
rs35005670	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35135081	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35419095	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4358788	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4457314	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4535724	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4540394	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7010902	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7813473	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv891430	chr8:125431030-125485027	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1017848	chr8:125432689-125489052	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
5	nsv891431	chr8:125437811-125485027	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv891432	chr8:125438093-125485027	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv891433	chr8:125438093-125498547	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125463800-125483800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:125464000-125484800	Weak transcription	Aorta	Aorta
3	chr8:125464000-125485000	Weak transcription	Fetal Kidney	kidney
4	chr8:125464600-125483200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:125464600-125484600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:125464600-125485200	Weak transcription	Colonic Mucosa	Colon
7	chr8:125464600-125485800	Weak transcription	Esophagus	oesophagus
8	chr8:125464600-125486000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:125464800-125484600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:125464800-125484800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:125464800-125485400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:125465000-125484400	Weak transcription	NHLF	lung
13	chr8:125465000-125485400	Weak transcription	Gastric	stomach
14	chr8:125465200-125483000	Weak transcription	Fetal Brain Male	brain
15	chr8:125465200-125483200	Weak transcription	Fetal Lung	lung
16	chr8:125465600-125482800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:125465600-125484200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:125465600-125484600	Weak transcription	HMEC	breast
19	chr8:125465600-125485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:125466000-125485400	Weak transcription	Lung	lung
21	chr8:125466200-125484600	Weak transcription	Right Ventricle	heart
22	chr8:125466400-125482800	Weak transcription	NHDF-Ad	bronchial
23	chr8:125466400-125483000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr8:125466400-125483000	Weak transcription	Brain Anterior Caudate	brain
25	chr8:125466400-125483200	Weak transcription	Spleen	Spleen
26	chr8:125466400-125484000	Weak transcription	Ovary	ovary
27	chr8:125466400-125484600	Weak transcription	A549	lung
28	chr8:125466400-125484800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:125466400-125484800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:125466600-125484000	Weak transcription	Fetal Muscle Leg	muscle
31	chr8:125466800-125482800	Weak transcription	Colon Smooth Muscle	Colon
32	chr8:125467200-125484400	Weak transcription	Thymus	Thymus
33	chr8:125467200-125484600	Weak transcription	Brain Angular Gyrus	brain
34	chr8:125467200-125484600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr8:125467200-125485400	Weak transcription	Left Ventricle	heart
36	chr8:125468000-125483000	Weak transcription	Hela-S3	cervix
37	chr8:125468200-125482800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr8:125468400-125483800	Weak transcription	NHEK	skin
39	chr8:125468400-125485200	Weak transcription	Brain Substantia Nigra	brain
40	chr8:125469000-125482800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:125469200-125482800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:125469800-125484000	Weak transcription	Placenta	Placenta
43	chr8:125472400-125482800	Weak transcription	GM12878-XiMat	blood
44	chr8:125473400-125485200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr8:125473600-125484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr8:125474600-125481000	Strong transcription	Primary B cells from cord blood	blood
47	chr8:125474800-125483000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr8:125475000-125483000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr8:125475000-125483400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr8:125475400-125483600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links