Variant report

Variant	rs4358788
Chromosome Location	chr8:125528647-125528648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125528338..125530863-chr8:125530890..125534338,3	MCF-7	breast:
2	chr8:125526709..125529370-chr8:125549418..125551803,2	K562	blood:
3	chr8:125527125..125529992-chr8:125530157..125532714,5	MCF-7	breast:
4	chr8:125499415..125501363-chr8:125528313..125531037,2	MCF-7	breast:
5	chr8:125527943..125529696-chr8:125534051..125535565,2	K562	blood:

Variant related genes	Relation type
ENSG00000147684	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000253106	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1131024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13250890	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13254054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13263130	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13264071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13269215	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13276295	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17298010	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34008273	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34115246	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34681068	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34684627	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34714561	0.82[EUR][1000 genomes]
rs35005670	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35135081	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35309726	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35419095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4457314	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4535724	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4540394	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010902	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7813473	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4358788	TRMT12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125488200-125550400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:125489000-125531200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:125489000-125541200	Weak transcription	Gastric	stomach
4	chr8:125489000-125543400	Weak transcription	Small Intestine	intestine
5	chr8:125493200-125539400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:125496600-125549600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:125496800-125547400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:125499000-125537200	Weak transcription	Esophagus	oesophagus
9	chr8:125500000-125538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:125500000-125538400	Weak transcription	Psoas Muscle	Psoas
11	chr8:125500000-125549600	Weak transcription	Fetal Brain Male	brain
12	chr8:125500200-125530800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:125501600-125535000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:125501600-125550000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr8:125504000-125550800	Weak transcription	Spleen	Spleen
16	chr8:125505800-125538600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:125506000-125538600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:125508400-125532200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:125510200-125536800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:125510400-125536200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:125510800-125532200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:125511600-125536400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:125512000-125536000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:125512200-125530400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr8:125512200-125531600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr8:125512400-125535800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:125512400-125536400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr8:125512600-125531600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:125512600-125533800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr8:125512600-125535600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr8:125512800-125532200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:125512800-125535600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr8:125513200-125532400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr8:125513200-125535800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:125514400-125529400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:125515600-125532200	Strong transcription	Primary T cells from cord blood	blood
37	chr8:125516200-125531200	Weak transcription	Fetal Kidney	kidney
38	chr8:125516200-125537200	Weak transcription	Lung	lung
39	chr8:125516200-125543600	Weak transcription	Aorta	Aorta
40	chr8:125516200-125549600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr8:125516200-125549600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr8:125516400-125549600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr8:125518400-125533800	Strong transcription	Adipose Nuclei	Adipose
44	chr8:125519200-125550000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr8:125519400-125530000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:125520000-125550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr8:125520600-125531000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:125521200-125529400	Strong transcription	GM12878-XiMat	blood
49	chr8:125521600-125535000	Weak transcription	Brain Angular Gyrus	brain
50	chr8:125521800-125529200	Strong transcription	Placenta	Placenta

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