Variant report

Variant	rs35319567
Chromosome Location	chr16:81820732-81820733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11862076	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11864983	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35692238	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81814400-81831800	Weak transcription	Adipose Nuclei	Adipose
2	chr16:81815200-81830000	Weak transcription	Esophagus	oesophagus
3	chr16:81815400-81830600	Weak transcription	Thymus	Thymus
4	chr16:81816800-81822200	Weak transcription	Colonic Mucosa	Colon
5	chr16:81817400-81822200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr16:81817800-81824000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
7	chr16:81818000-81821000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:81818000-81823200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr16:81818000-81827800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr16:81818000-81830400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr16:81818000-81845000	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr16:81818200-81823800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr16:81818400-81826000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:81818600-81824400	Weak transcription	Colon Smooth Muscle	Colon
15	chr16:81818600-81825400	Weak transcription	Fetal Intestine Small	intestine
16	chr16:81819000-81824600	Weak transcription	Gastric	stomach
17	chr16:81819200-81827800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr16:81819400-81820800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr16:81819600-81820800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr16:81819600-81821000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr16:81819600-81821200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr16:81819800-81820800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:81819800-81820800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr16:81819800-81820800	Enhancers	HMEC	breast
25	chr16:81819800-81821000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr16:81819800-81821400	Enhancers	Fetal Kidney	kidney
27	chr16:81819800-81848800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr16:81820000-81820800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr16:81820000-81820800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr16:81820000-81821000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr16:81820000-81821000	Enhancers	Liver	Liver
32	chr16:81820200-81823800	Weak transcription	Spleen	Spleen
33	chr16:81820200-81825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr16:81820400-81820800	Weak transcription	Placenta	Placenta
35	chr16:81820400-81821000	Enhancers	Duodenum Mucosa	Duodenum
36	chr16:81820400-81821800	Strong transcription	Primary B cells from cord blood	blood
37	chr16:81820400-81822000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr16:81820400-81822200	Weak transcription	Lung	lung
39	chr16:81820400-81824600	Weak transcription	A549	lung
40	chr16:81820600-81823800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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