Variant report

Variant	rs35692238
Chromosome Location	chr16:81823314-81823315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81818658..81820858-chr16:81822107..81824530,2	K562	blood:
2	chr16:81811332..81815788-chr16:81822304..81826412,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197943	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11862076	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11864983	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12716920	0.94[AFR][1000 genomes]
rs35319567	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81814400-81831800	Weak transcription	Adipose Nuclei	Adipose
2	chr16:81815200-81830000	Weak transcription	Esophagus	oesophagus
3	chr16:81815400-81830600	Weak transcription	Thymus	Thymus
4	chr16:81817800-81824000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
5	chr16:81818000-81827800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr16:81818000-81830400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr16:81818000-81845000	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr16:81818200-81823800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr16:81818400-81826000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr16:81818600-81824400	Weak transcription	Colon Smooth Muscle	Colon
11	chr16:81818600-81825400	Weak transcription	Fetal Intestine Small	intestine
12	chr16:81819000-81824600	Weak transcription	Gastric	stomach
13	chr16:81819200-81827800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr16:81819800-81848800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr16:81820200-81823800	Weak transcription	Spleen	Spleen
16	chr16:81820200-81825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr16:81820400-81824600	Weak transcription	A549	lung
18	chr16:81820600-81823800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr16:81820800-81824400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr16:81820800-81829400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr16:81821000-81823800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr16:81821000-81825800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr16:81821000-81826000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr16:81821000-81827800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr16:81821000-81829600	Weak transcription	Placenta	Placenta
26	chr16:81821400-81824400	Weak transcription	Fetal Kidney	kidney
27	chr16:81821800-81824800	Genic enhancers	Primary B cells from cord blood	blood
28	chr16:81822000-81826000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:81822400-81829400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr16:81822600-81824000	Weak transcription	Lung	lung
31	chr16:81822600-81824400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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