Variant report

Variant	rs35326596
Chromosome Location	chr2:37253323-37253324
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37250519..37253429-chr2:85770477..85772159,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1008838	0.93[ASN][1000 genomes]
rs10208258	0.80[ASN][1000 genomes]
rs10490659	0.83[EUR][1000 genomes]
rs10495868	0.86[ASN][1000 genomes]
rs10865120	0.90[ASN][1000 genomes]
rs11124549	0.88[EUR][1000 genomes]
rs11124557	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11675109	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11676225	0.83[EUR][1000 genomes]
rs11678303	0.83[EUR][1000 genomes]
rs11682966	0.83[EUR][1000 genomes]
rs11686605	0.88[EUR][1000 genomes]
rs11690477	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11691236	0.88[EUR][1000 genomes]
rs12612838	0.86[ASN][1000 genomes]
rs13432823	0.81[ASN][1000 genomes]
rs17020005	0.83[EUR][1000 genomes]
rs17020024	0.83[EUR][1000 genomes]
rs2287087	0.83[EUR][1000 genomes]
rs2540939	0.83[EUR][1000 genomes]
rs2541000	0.85[ASN][1000 genomes]
rs2541002	0.82[ASN][1000 genomes]
rs2706805	0.83[ASN][1000 genomes]
rs2706813	0.80[ASN][1000 genomes]
rs41486347	0.83[EUR][1000 genomes]
rs4635515	0.95[ASN][1000 genomes]
rs4670651	0.82[ASN][1000 genomes]
rs55993128	0.83[EUR][1000 genomes]
rs56186144	0.83[EUR][1000 genomes]
rs57671539	0.83[EUR][1000 genomes]
rs57884362	0.83[EUR][1000 genomes]
rs58970461	0.83[EUR][1000 genomes]
rs59420011	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59854977	0.88[EUR][1000 genomes]
rs60022493	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6715033	0.83[EUR][1000 genomes]
rs6739553	0.83[EUR][1000 genomes]
rs6756876	0.83[EUR][1000 genomes]
rs73924952	0.88[EUR][1000 genomes]
rs7581702	0.95[ASN][1000 genomes]
rs7595362	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv581471	chr2:37213186-37257386	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv581472	chr2:37235324-37291320	Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1820206	chr2:37236821-37277811	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv978993	chr2:37251826-37260761	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
2	chr2:37219200-37256400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:37221000-37307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:37223400-37282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:37223400-37300400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr2:37224000-37256000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:37224000-37270600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:37226800-37256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:37228600-37267000	Weak transcription	Stomach Mucosa	stomach
10	chr2:37237600-37255400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:37238200-37255200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:37238400-37260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:37240200-37260800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr2:37240400-37254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr2:37240400-37304800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr2:37240600-37306000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:37240800-37281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:37240800-37306400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr2:37240800-37307000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:37241000-37272600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr2:37241200-37256600	Weak transcription	Gastric	stomach
22	chr2:37241200-37306000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr2:37241400-37299600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr2:37242000-37287000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:37242200-37265800	Strong transcription	Liver	Liver
26	chr2:37242200-37305800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:37242800-37256200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:37244200-37255200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr2:37244600-37256200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:37244800-37256000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr2:37245000-37261400	Strong transcription	Primary hematopoietic stem cells	blood
32	chr2:37245400-37260000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:37246200-37283000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr2:37246800-37279800	Weak transcription	Pancreas	Pancrea
35	chr2:37247000-37279200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:37247200-37256600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:37247800-37253400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:37248400-37255400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:37248600-37256600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr2:37248600-37263200	Weak transcription	Hela-S3	cervix
41	chr2:37248600-37263200	Weak transcription	HUVEC	blood vessel
42	chr2:37248800-37253600	Weak transcription	Colon Smooth Muscle	Colon
43	chr2:37248800-37253600	Weak transcription	A549	lung
44	chr2:37248800-37255000	Weak transcription	HSMMtube	muscle
45	chr2:37248800-37263800	Strong transcription	Adipose Nuclei	Adipose
46	chr2:37248800-37266800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr2:37248800-37279200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:37248800-37290200	Weak transcription	Psoas Muscle	Psoas
49	chr2:37249000-37253600	Weak transcription	Colonic Mucosa	Colon
50	chr2:37249000-37254000	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links