Variant report

Variant	rs35328670
Chromosome Location	chr16:82176661-82176662
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82176048..82178919-chr16:82182025..82184797,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10514531	0.98[EUR][1000 genomes]
rs10514533	0.86[EUR][1000 genomes]
rs1056629	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1056654	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1056690	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11150443	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11150444	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11150445	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11641082	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11641178	0.93[EUR][1000 genomes]
rs11642247	0.93[EUR][1000 genomes]
rs11642251	0.93[EUR][1000 genomes]
rs11642280	0.87[EUR][1000 genomes]
rs11642453	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11643324	0.93[EUR][1000 genomes]
rs11643724	0.93[EUR][1000 genomes]
rs11644183	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11645618	0.92[EUR][1000 genomes]
rs11646480	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11647519	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11647563	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11647691	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11647928	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11649427	0.92[EUR][1000 genomes]
rs12444846	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12445764	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12446030	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12446104	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12447225	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12447597	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12447673	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12447876	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12447913	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12448665	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12448672	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12448785	0.95[EUR][1000 genomes]
rs13330853	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13333365	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16956483	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16956524	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs16956527	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs16956533	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs16956547	0.93[EUR][1000 genomes]
rs16956550	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs16956555	0.98[EUR][1000 genomes]
rs16956556	0.97[EUR][1000 genomes]
rs16956565	0.93[EUR][1000 genomes]
rs16956572	0.97[EUR][1000 genomes]
rs16956576	0.92[EUR][1000 genomes]
rs17804513	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17804602	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2081256	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081257	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081258	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2098749	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2098750	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303268	0.98[EUR][1000 genomes]
rs2911428	0.85[EUR][1000 genomes]
rs3751863	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs3751865	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3794705	0.92[EUR][1000 genomes]
rs3829542	0.93[EUR][1000 genomes]
rs4530129	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4888206	0.99[EUR][1000 genomes]
rs4888207	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4889463	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4889465	0.86[EUR][1000 genomes]
rs4889468	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4889475	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4889478	0.87[EUR][1000 genomes]
rs4889480	0.86[EUR][1000 genomes]
rs61366082	0.98[EUR][1000 genomes]
rs7186965	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7193586	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72487977	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73591443	0.87[ASN][1000 genomes]
rs7404586	0.89[EUR][1000 genomes]
rs9922715	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9937667	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9940821	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9940865	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9941179	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv457578	chr16:82136566-82197883	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv573366	chr16:82136566-82197883	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv457579	chr16:82150293-82216622	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv573368	chr16:82150293-82216622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907013	chr16:82154619-82196808	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv525467	chr16:82154619-82223485	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv457580	chr16:82165183-82182104	Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv573369	chr16:82165183-82182104	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv573370	chr16:82165183-82185320	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1061064	chr16:82165314-82213799	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1056381	chr16:82165314-82215388	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1062687	chr16:82165516-82213799	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82157000-82191200	Weak transcription	Fetal Brain Male	brain
2	chr16:82164200-82179400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:82165800-82179200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:82167200-82179200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:82167400-82179400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr16:82167600-82180600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr16:82167800-82180200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:82168000-82181000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr16:82168000-82195400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr16:82168400-82180800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:82168400-82195600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr16:82168600-82179200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr16:82168600-82180400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr16:82168600-82191000	Weak transcription	HSMMtube	muscle
15	chr16:82168600-82195600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr16:82168800-82180600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr16:82168800-82180600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr16:82168800-82180800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr16:82168800-82182000	Weak transcription	NH-A	brain
20	chr16:82169000-82179200	Weak transcription	Brain Angular Gyrus	brain
21	chr16:82169000-82179400	Weak transcription	Fetal Brain Female	brain
22	chr16:82169000-82180000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:82169000-82180200	Weak transcription	Primary B cells from cord blood	blood
24	chr16:82169200-82179200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr16:82169200-82180600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr16:82169400-82179200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr16:82169400-82180000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr16:82169600-82179400	Weak transcription	HMEC	breast
29	chr16:82169800-82179400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:82170000-82180800	Weak transcription	Fetal Lung	lung
31	chr16:82170200-82180400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr16:82170400-82179600	Weak transcription	Brain Germinal Matrix	brain
33	chr16:82170600-82180400	Weak transcription	A549	lung
34	chr16:82170800-82179200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr16:82170800-82180600	Weak transcription	Left Ventricle	heart
36	chr16:82170800-82180600	Weak transcription	Lung	lung
37	chr16:82170800-82195800	Weak transcription	Colon Smooth Muscle	Colon
38	chr16:82171000-82179400	Weak transcription	Aorta	Aorta
39	chr16:82171000-82180400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr16:82171000-82180400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr16:82171000-82180600	Weak transcription	Colonic Mucosa	Colon
42	chr16:82171000-82180800	Weak transcription	Right Ventricle	heart
43	chr16:82171200-82179400	Weak transcription	NHLF	lung
44	chr16:82171200-82185800	Weak transcription	Fetal Intestine Small	intestine
45	chr16:82171200-82193400	Weak transcription	Ovary	ovary
46	chr16:82171400-82179800	Weak transcription	Adipose Nuclei	Adipose
47	chr16:82171400-82180000	Weak transcription	NHDF-Ad	bronchial
48	chr16:82171400-82180600	Weak transcription	Spleen	Spleen
49	chr16:82171600-82179400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr16:82171600-82180600	Weak transcription	Osteobl	bone

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